report outline, added state transitions to constants

.vscode/settings.json

@@ -1,3 +1,5 @@
 {
-    "python.pythonPath": "venv/bin/python"
+    "python.pythonPath": "venv/bin/python",
+    "python.linting.pylintEnabled": true,
+    "python.linting.enabled": true
 }

constants.py

@@ -1,7 +1,8 @@
 from dataclasses import dataclass
+import numpy as np
 
 
-@dataclass(frozen=True)
+@dataclass(frozen=True)  # implements constructor among other boilerplate
 class State:
     mean: float
     variance: float
@@ -14,3 +15,11 @@ state1 = State(1, 1.44, 0.44, 0.02)
 state2 = State(4, 0.49, 0.56, 0.03)
         
 observations = [3.8, 4.2, 3.4, -0.4, 1.9, 3.0, 1.6, 1.9, 5.0]
+
+a_matrix = np.array([[0.92, 0.06],
+                     [0.04, 0.93]])
+
+state_transition = np.array([[0, 0.44, 0.56, 0], 
+                             [0, 0.92, 0.06, 0.02], 
+                             [0, 0.04, 0.93, 0.03], 
+                             [0, 0, 0, 0]])

report/report.lyx

@@ -9,6 +9,12 @@
 \def\changemargin#1#2{\list{}{\rightmargin#2\leftmargin#1}\item[]}
 \let\endchangemargin=\endlist 
 \pagenumbering{roman}
+
+\usepackage{color}
+
+\definecolor{commentgreen}{RGB}{0,94,11}
+\definecolor{darkblue}{rgb}{0,0,0.75}
+\definecolor{darkred}{rgb}{0.6,0,0}
 \end_preamble
 \use_default_options true
 \begin_modules
@@ -39,13 +45,13 @@ figs-within-sections
 \output_sync 0
 \bibtex_command biber
 \index_command default
-\paperfontsize 11
+\paperfontsize default
 \spacing onehalf
 \use_hyperref true
-\pdf_title "Multi-Source Holoportation with LiveScan3D"
+\pdf_title "Hidden Markov Models"
 \pdf_author "Andy Pack"
-\pdf_subject "Undergraduate dissertation outlining developments made to extend the LiveScan3D suite to support streaming multiple scenes simultaneously"
-\pdf_keywords "LiveScan3D, Kinect, Holoportation, AR"
+\pdf_subject "EEEM030"
+\pdf_keywords "EEEM030"
 \pdf_bookmarks true
 \pdf_bookmarksnumbered false
 \pdf_bookmarksopen false
@@ -113,13 +119,32 @@ figs-within-sections
 \begin_layout Title
 
 \size giant
-Speech Recognition: Hidden Markov Models
+Hidden Markov Model Analysis
 \end_layout
 
 \begin_layout Author
 Andy Pack
 \end_layout
 
+\begin_layout Standard
+\begin_inset VSpace 15pheight%
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+\align center
+\begin_inset Graphics
+	filename ../../../matlab/lpss/report/surrey.png
+	lyxscale 15
+	width 40col%
+
+\end_inset
+
+
+\end_layout
+
 \begin_layout Standard
 \begin_inset VSpace vfill
 \end_inset
@@ -130,6 +155,10 @@ Andy Pack
 \begin_layout Standard
 \noindent
 \align center
+EEEM030
+\begin_inset Newline newline
+\end_inset
+
 January 2021
 \size large
 
@@ -154,6 +183,10 @@ University of Surrey
 
 \end_layout
 
+\begin_layout Abstract
+abstract
+\end_layout
+
 \begin_layout Standard
 \begin_inset CommandInset toc
 LatexCommand tableofcontents
@@ -164,7 +197,7 @@ LatexCommand tableofcontents
 \end_layout
 
 \begin_layout Standard
-\begin_inset Newpage newpage
+\begin_inset Newpage pagebreak
 \end_inset
 
 
@@ -226,8 +259,24 @@ setcounter{page}{1}
 Introduction
 \end_layout
 
-\begin_layout Standard
-Intro
+\begin_layout Subsection
+Brief
+\end_layout
+
+\begin_layout Section
+Implementation
+\end_layout
+
+\begin_layout Section
+Results
+\end_layout
+
+\begin_layout Section
+Discussion
+\end_layout
+
+\begin_layout Section
+Conclusion
 \end_layout
 
 \begin_layout Standard
@@ -258,7 +307,22 @@ options "bibtotoc"
 
 \begin_layout Section
 \start_of_appendix
-appendix
+Intermediate Results
+\end_layout
+
+\begin_layout Section
+Source Code
+\end_layout
+
+\begin_layout Standard
+\begin_inset CommandInset include
+LatexCommand lstinputlisting
+filename "../constants.py"
+lstparams "language=Python,breaklines=true,frame=tb,otherkeywords={self},emph={State},emphstyle={\\ttb\\color{darkred}},basicstyle={\\ttfamily},commentstyle={\\color{commentgreen}\\itshape},keywordstyle={\\color{darkblue}},emphstyle={\\color{red}},stringstyle={\\color{red}},caption={Constants file defining state transition probabilities and PDFs},label={constants-listing}"
+
+\end_inset
+
+
 \end_layout
 
 \end_body

requirements.txt

@@ -1,4 +1,5 @@
 argon2-cffi==20.1.0
+astroid==2.4.2
 async-generator==1.10
 attrs==20.3.0
 backcall==0.2.0
@@ -14,6 +15,7 @@ idna==2.10
 ipykernel==5.3.4
 ipython==7.19.0
 ipython-genutils==0.2.0
+isort==5.6.4
 jedi==0.17.2
 Jinja2==2.11.2
 json5==0.9.5
@@ -24,8 +26,10 @@ jupyterlab==2.2.9
 jupyterlab-pygments==0.1.2
 jupyterlab-server==1.2.0
 kiwisolver==1.3.1
+lazy-object-proxy==1.4.3
 MarkupSafe==1.1.1
 matplotlib==3.3.3
+mccabe==0.6.1
 mistune==0.8.4
 nbclient==0.5.1
 nbconvert==6.0.7
@@ -44,6 +48,7 @@ prompt-toolkit==3.0.8
 ptyprocess==0.6.0
 pycparser==2.20
 Pygments==2.7.3
+pylint==2.6.0
 pyparsing==2.4.7
 pyrsistent==0.17.3
 python-dateutil==2.8.1
@@ -53,8 +58,10 @@ Send2Trash==1.5.0
 six==1.15.0
 terminado==0.9.1
 testpath==0.4.4
+toml==0.10.2
 tornado==6.1
 traitlets==5.0.5
 urllib3==1.26.2
 wcwidth==0.2.5
 webencodings==0.5.1
+wrapt==1.12.1

scratchpad.ipynb

@@ -12,29 +12,30 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [
     {
      "output_type": "execute_result",
      "data": {
       "text/plain": [
-       "1"
+       "0.92"
       ]
      },
      "metadata": {},
-     "execution_count": 3
+     "execution_count": 2
     }
    ],
    "source": [
     "from constants import *\n",
     "\n",
-    "state1.mean"
+    "state1.mean\n",
+    "state_transition[1,1]"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [],
    "source": []
@@ -56,7 +57,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.5-final"
+   "version": "3.8.6-final"
   }
  },
  "nbformat": 4,